Shall we guess the names of the programs, where they are going, and which preferences you want to change?

But TBH there are few programs that allow you to configure the operational options until after it is installed, and that would then require a GUI automation tool, like AutoIt.
In some case you can write a pre-configured configuration file where the program usually keeps it, or write the options to the registry in the right format - but how could we even start to assist you without knowing the exact programs and what changes you want to make.
If I have the wrong end of the stick and have misunderstood, then you can blame yourself for not providing enough information.

foxi, trying to help but you don't make it easy...